Xiting Yan

PhD Student
Molecular and Computational Biology
Department of Biological Sciences
University of Southern California

1050 Childs Way, RRI416F
Los Angeles, CA 90089-2910
Email: xitingya at usc dot edu
Phone: (213) 821-3980



Education


Research Interests


Publications and Manuscripts

  1. Yan, X., Sun, F. and Chen, T. TranSEQ: Estimating Expression Levels of Alternatively Spliced Transcripts using mRNA-seq Data. Submitted to Genome Research. [Supplementary Site]
  2. Duan, S., Wan, L., Fu, W.J., Pan, H., Ding, Q., Chen, C., Han, P., Zhu, X., Du, L., Liu, H., Chen, Y., Liu, X.,Yan, X., Deng, M., Qian, M. Nonlinear cooperation of p53-ING1-induced bax expression and protein S-nitrosylation in GSNO-induced thymocyte apoptosis: a quantitative approach with cross-platform validation. Apoptosis. 2008, In press. [Pubmed]
  3. Yan, X. and Sun, F. Testing gene set enrichment for subset of genes: Sub-GSE. BMC Bioinformatics. 2008, 9:362. [Pubmed] [Supplementary Site]
  4. Jia, L., Berman, B.P., Jariwala, U., Yan, X., Cogan, J.P., Walters, A., Chen, T., Buchanan, G., Frenkel, B. and Coetzee, G.A. Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity. PLoS ONE. 2008, 3(11):e3645. [Publisher Site]
  5. Pregizer, S., Baniwal, S.K., Yan, X., Borok, Z. and Frenkel, B. Progressive recruitment of Runx2 to genomic targets despite decreasing expression during osteoblast differentiation. J Cell Biochem. 2008, 105(4):965-70.[Pubmed]
  6. Cheng, C.*, Yan, X.*, Sun, F. and Li, L.M. Inferring activity changes of transcription factors by binding association with sorted expression profiles. BMC Bioinformatics. 2007, 8:452.[Pubmed] [Supplementary Site]
    * Equally Contribute

  7. Cheng, C., Ma, X., Yan, X., Sun, F. and Li, L.M. MARD: a new method to detect differential gene expression in treatment-control time courses. Bioinformatics. 2006, 22(21):2650-7. [Pubmed] [Supplementary Site]
  8. Yan, X., Deng, M., Fung, W.K., Qian, M. Detecting differentially expressed genes by relative entropy. J Theor Biol. 2005, 234(3):395-40. [Pubmed] [Supplementary Site]
  9. Feng, X., Qian, M., Deng, M., Ma, X., Yan, X. Application of hidden semi-Markov model to 3-prime splice sites identification. Progress in Biochemistry and Biophysics, 2004, 31(5):455-458. [Publisher Site]

Teaching

Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California


 

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